Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs927578 chr13:28075022 G/T 8.65E-7 174 15.13 17.4 3.5 KM Plot
PAAD rs9287283 chr1:16314185 T/A 2.03E-6 176 3.43 14 15.62 KM Plot
PAAD rs929268 chr17:39100732 C/T 4.94E-6 171 15.37 17.03 6.63 KM Plot
PAAD rs929614 chr6:44771934 C/A 8.42E-5 176 16.48 16.12 12.42 KM Plot
PAAD rs9296453 chr6:45227432 C/T 4.58E-5 174 16.48 15.77 11.77 KM Plot
PAAD rs9296457 chr6:45264687 A/G 8.99E-5 175 16.37 15.93 12.2 KM Plot
PAAD rs9345594 chr6:65772163 T/C 0 177 15.62 13.6 0.4 KM Plot
PAAD rs9349309 chr6:45025814 G/T 0.000129 177 19.47 15.57 13.13 KM Plot
PAAD rs9354211 chr6:65777350 C/T 0 178 0.4 13.6 15.67 KM Plot
PAAD rs9357464 chr6:44952441 T/C 9.93E-5 177 16.07 16.15 11.98 KM Plot
PAAD rs9357484 chr6:45265882 C/A 0.000143 176 16.22 15.93 12.2 KM Plot
PAAD rs9363330 chr6:65771418 T/G 0 177 15.62 13.6 0.4 KM Plot
PAAD rs9367214 chr6:45025912 G/A 0.000129 177 19.47 15.57 13.13 KM Plot
PAAD rs9369530 chr6:45024911 G/A 0.000129 177 19.47 15.57 13.13 KM Plot
PAAD rs9369533 chr6:45038306 G/A 0.00012 176 16.37 15.67 11.77 KM Plot